PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 138aa    MW: 15530.3 Da    PI: 5.2925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29480genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19653253
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  PEQU_29480  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLM 53
                69******9.**********8.....334*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-21665IPR016177DNA-binding domain
PROSITE profilePS5103221.14663IPR001471AP2/ERF domain
PfamPF008471.2E-11655IPR001471AP2/ERF domain
SMARTSM003801.0E-41669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-35664IPR001471AP2/ERF domain
CDDcd000185.64E-33663No hitNo description
PRINTSPR003672.0E-11718IPR001471AP2/ERF domain
PRINTSPR003672.0E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MPKQLRYRGV RQRHWGSWVS EIRHPLLKTR IWLGTFETAE DAARAYDEAA RLMCGSNART  60
NFPLSSNSAS ALSPSLVAKL ERCCVGSEEE IRRTKAEDVG MDDEFIEEMI EELRYNGAVE  120
ISSSYSSSSS SSSFFPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19369269ATERF1
3gcc_A1e-19369269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394886.12e-60PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-43ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0SKD72e-59M0SKD7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P02200_0016e-59(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-25ERF family protein